CRAN Package Check Results for Maintainer ‘Elena Aledo <elenaaledoesteban at gmail.com>’

Last updated on 2024-11-19 09:50:17 CET.

Package	ERROR	OK
orthGS	2	11

Package orthGS

Current CRAN status: ERROR: 2, OK: 11

Additional issues

noSuggests

Version: 0.1.5
Check: examples
Result: ERROR Running examples in ‘orthGS-Ex.R’ failed The error most likely occurred in: > ### Name: gapless_msa > ### Title: Remove Gaps in a MSA > ### Aliases: gapless_msa > > ### ** Examples > > gapless_msa(msa(sequences = c("APGW", "AGWC", "CWGA"),ids = c("a", "b", "c"))$ali) Error in msa(sequences = c("APGW", "AGWC", "CWGA"), ids = c("a", "b", : You must install the package muscle in order to use this function Calls: gapless_msa -> as.matrix -> msa Execution halted Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.1.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Searching_for_Orthologous.Rmd’ using rmarkdown Quitting from lines 56-61 [unnamed-chunk-5] (Searching_for_Orthologous.Rmd) Error: processing vignette 'Searching_for_Orthologous.Rmd' failed with diagnostics: You must install the package muscle in order to use this function --- failed re-building ‘Searching_for_Orthologous.Rmd’ --- re-building ‘Unraveling_the_hiden_paralogous.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-clang/orthGS.Rcheck/vign_test/orthGS/vignettes/Unraveling_the_hiden_paralogous_files/figure-html/unnamed-chunk-6-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19334 bytes Input file size = 19436 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15210 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15210 Output IDAT size = 15210 bytes (4124 bytes decrease) Output file size = 15288 bytes (4148 bytes = 21.34% decrease) --- finished re-building ‘Unraveling_the_hiden_paralogous.Rmd’ SUMMARY: processing the following file failed: ‘Searching_for_Orthologous.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.1.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘Searching_for_Orthologous.Rmd’ using rmarkdown Quitting from lines 56-61 [unnamed-chunk-5] (Searching_for_Orthologous.Rmd) Error: processing vignette 'Searching_for_Orthologous.Rmd' failed with diagnostics: You must install the package muscle in order to use this function --- failed re-building ‘Searching_for_Orthologous.Rmd’ --- re-building ‘Unraveling_the_hiden_paralogous.Rmd’ using rmarkdown ** Processing: /data/gannet/ripley/R/packages/tests-devel/orthGS.Rcheck/vign_test/orthGS/vignettes/Unraveling_the_hiden_paralogous_files/figure-html/unnamed-chunk-6-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19299 bytes Input file size = 19401 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15354 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15354 Output IDAT size = 15354 bytes (3945 bytes decrease) Output file size = 15432 bytes (3969 bytes = 20.46% decrease) --- finished re-building ‘Unraveling_the_hiden_paralogous.Rmd’ SUMMARY: processing the following file failed: ‘Searching_for_Orthologous.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc