Welcome to ftp.vim.org,
Hosted by ftp.nluug.nl Current directory: /ftp/os/Linux/distr/salix/i486/extra-15.0/source/academic/HMMER/ |
Contents of README:HMMER: biosequence analysis using profile hidden Markov models HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs). HMMER is often used together with a profile database, such as Pfam or many of the databases that participate in Interpro. But HMMER can also work with query sequences, not just profiles, just like BLAST. For example, you can search a protein query sequence against a database with phmmer, or do an iterative search with jackhmmer. HMMER is designed to detect remote homologs as sensitively as possible, relying on the strength of its underlying probability models. In the past, this strength came at significant computational expense, but as of the new HMMER3 project, HMMER is now essentially as fast as BLAST. Publications: http://hmmer.org/publications.html |
Name Last modified Size
Parent Directory - HMMER.SlackBuild 11-Mar-2022 06:34 3.5K HMMER.info 03-Jun-2022 12:11 269 README 03-Jun-2022 12:11 935 hmmer-3.3.2.tar.gz 03-Jun-2022 12:11 17M slack-desc 03-Jun-2022 12:11 907
NLUUG - Open Systems. Open Standards
Become a member
and get discounts on conferences and more, see the NLUUG website!